ChromBERT
1.1.0
Getting started:
Installation
Quick Tour
Tutorials:
Tutorial for fine-tuning ChromBERT
Compiled Scripts for fine-tuning of ChromBERT
Tutorial for get context specific TRN embedding
CLI Reference
Examples:
Example for cistrome imputation using prompt-enhanced ChromBERT
Example for causal eQTL identification using prompt-enhanced ChromBERT
Example for context-specific TRN: functional collaborations with EZH2 on funtional distinct loci
Example for context-specific TRN: perturbation of STARR-seq
Example for key regulators inference during cell state transition
Example for key regulators inference during cell state transition: chromatin accessibility
Example for key regulators inference during cell state transition: transcriptome
ChromBERT
Example for key regulators inference during cell state transition
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Example for key regulators inference during cell state transition
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Example for key regulators inference during cell state transition: chromatin accessibility
Example for key regulators inference during cell state transition: transcriptome