-
--basedir
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19]
-
--batch-size
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15]
-
--center
-
--checkpoint-metric
-
--checkpoint-mode
-
--ckpt
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11]
-
--dropout
-
--finetune-ckpt
-
--flank-window
-
--genome
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]
-
--gep-gradient-checkpoint
-
--gep-parallel-embedding
-
--gep-zero-inflation
-
--gpu
-
--grad-samples
-
--hdf5-file
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15]
-
--help
-
--hf-endpoint
-
--high-resolution
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]
-
--ignore
-
--ignore-object
-
--kind
-
--label
-
--limit-val-batches
-
--log-every-n-steps
-
--loss
-
--lr
-
--mask
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11]
-
--max-epochs
-
--meta
-
--mode
-
--name
|
-
--no-filter
-
--num-workers
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15]
-
--o-bw
-
--o-h5
-
--o-table
-
--oname
-
--perturbation
-
--perturbation-object
-
--perturbation-value
-
--pretrain-ckpt
-
--pretrain-trainable
-
--prompt-celltype
-
--prompt-celltype-cache-file
-
--prompt-dim-external
-
--prompt-kind
-
--prompt-regulator
-
--prompt-regulator-cache-file
-
--prompt-regulator-cache-limit
-
--prompt-regulator-cache-pin-memory
-
--save-top-k
-
--tag
-
--test
-
--train
-
--val-check-interval
-
--valid
-
--warmup-ratio
-
-d
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15]
-
-g
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]
-
-hr
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]
-
-k
- command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11]
-
-o
|